In order to take advantage of the Windows upgrade license that is included with Windows Intune, you should really be looking at tools such as MDT to help simplify the deployment process.
MDT’s new features and enhancements make large-scale desktop and server deployments smoother than ever!
The Microsoft Deployment Toolkit (MDT) 2012 Beta 2 is now available for download! For System Center Configuration Manager customers, the MDT 2012 Beta 2 provides an improved, extensible wizard and designer for customizing deployment questions. MDT 2012 makes full use of the capabilities provided by System Center Configuration Manager 2012 for OS deployment. MDT 2012 integrates with configuration templates from the Security Compliance Manager (SCM) tool to ensure a secure Windows installation from the beginning of the deployment. Download the latest version of MDT and improve your deployment experience. Existing MDT users will find more reliability and flexibility with the many small enhancements and bug fixes and a smooth and simple upgrade process.